Publication

2024

Original papers

• "Identification of a novel NADPH generation reaction in the pentose phosphate pathway in Escherichia coli using mBFP"
  Koichiro Ueno, Shogo Sawada, Mai Ishibashi, Yoshiki Kanda, Hiroshi Shimizu, Yoshihiro Toya
  (2024).

  • DOI: 10.1128/jb.00276-24
• "A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of Streptococcus pyogenes."
  Yujiro Hirose, Daniel C Zielinski, Saugat Poudel, Kevin Rychel, Jonathon L Baker, Yoshihiro Toya, Masaya Yamaguchi, Almut Heinken, Ines Thiele, Shigetada Kawabata, Bernhard O Palsson, Victor Nizet
  mSystems (2024).

  • DOI: 10.1128/msystems.00736-24
• "Utilizing ribose 1,5-bisphosphate isomerase and RuBisCO-equipped Escherichia coli Nissle for low-carbon footprint GABA production"
  Sefli Sri Wahyu Effendi, Yoshihiro Toya, Hiroshi Shimizu, Chenfeng Xue, I-Son Ng
  ACS Sustainable Chemistry and Engineering (2024).

  • DOI: 10.1021/acssuschemeng.4c03537
• "Engineering Escherichia coli for efficient glutathione production"
  Hiroki Mori, Misato Matsui, Takahiro Bamba, Yoshimi Hori, Sayaka Kitamura, Yoshihiro Toya, Ryota Hidese, Hisashi Yasueda, Tomohisa Hasunuma, Hiroshi Shimizu, Naoaki Taoka, Shingo Kobayashi
  Metabolic Engineering 84, 180-190 (2024).

  • DOI: https://doi.org/10.1016/j.ymben.2024.07.001
• "Metabolome analysis of metabolic burden in Escherichia coli caused by overexpression of green fluorescent protein and delta-rhodopsin"
  Chinatsu Matsuyama, Taisuke Seike, Nobuyuki Okahashi, Teppei Niide, Kiyotaka Y. Hara, Jun Ishii, Hiroshi Shimizu, Yoshihiro Toya, Fumio Matsuda
  Journal of Bioscience and Bioengineering (2024).

  • DOI: 10.1016/j.jbiosc.2023.12.003

Review papers

• "Coupling and uncoupling growth and product formation for producing chemicals"
  Yoshihiro Toya, Hiroshi Shimizu
  Current Opinion in Biotechnology 87, 101133 (2024).

  • URL

Ph.D. theses

• "シアノバクテリアにおける光振動条件や代謝阻害剤が及ぼす光合成への影響の解析"
  今田辰海
  (2024).

Books

• "物質生産のための微生物代謝のin silicoデザイン、微生物を用いた有用物質生産技術の開発第１章第４節"
  戸谷吉博、清水浩
  技術情報協会, １９－２６ (2024).