Publication

2021

Original papers

• "Reactor control system in bacterial co-culture based on fluorescent proteins using an Arduino-based home-made device"
  Minori Kusuda, Hiroshi Shimizu, Yoshihiro Toya
  Biotechnology Journal 16, 12, 2100169 (2021).

  • URL
• "An open-source Python package for 13C-based metabolic flux analysis"
  Fumio Matsuda, Kohsuke Maeda, Takeo Taniguchi, Yuya Kondo, Futa Yatabe, Nobuyuki Okahashi, Hiroshi Shimizu
  Metabolic Engineering Communications, 13, e00177 (2021).
• "Proteome analysis of response to different spectral light irradiation in Synechocystis sp. PCC 6803"
  Masakazu Toyoshima, Masumi Sakata, Yoshifumi Ueno, Yoshihiro Toya, Fumio Matsuda, Seiji Akimoto, Hiroshi Shimizu
  Journal of Proteomics 246, 104306 (2021).
• "Soft-sensor development for monitoring the lysine fermentation process"
  Kento Tokuyama, Yoshiki Shimodaira, Yohei Kodama, Ryuzo Matsui, Yasuhiro Kusunose, Shunsuke Fukushima, Hiroaki Nakai, Yuichiro Tsuji, Yoshihiro Toya, Fumio Matsuda, Hiroshi Shimizu
  Journal of Bioscience and Bioengineering 132, 2, 183-189 (2021).
• "Treatment of RB1-intact hepatocellular carcinoma with CDK4/6 inhibitor combination therapy"
  Jindan Sheng, Susumu Kohno, Nobuhiro Okada, Nobuyuki Okahashi, Kana Teranishi, Fumio Matsuda, Hiroshi Shimizu, Paing Linn, Naoko Nagatani, Minako Yamamura, Kenichi Harada, Shin-ichi Horike, Hiroshi Inoue, Seiji Yano, Sharad Kumar, Shunsuke Kitajima, Itsuki Ajioka, Chiaki Takahashi
  Hepatology (2021).
• "Random transfer of Ogataea polymorpha genes into Saccharomyces cerevisiae revealed a complex background of heat tolerance"
  Taisuke Seike, Yuki Narazaki, Yoshinobu Kaneko, Hiroshi Shimizu, Fumio Matsuda
  Journal of Fungi 7, 4, 302 (2021).
• "Mutations in hik26 and slr1916 lead to high-light stress tolerance in Synechocystis sp. PCC6803"
  Katsunori Yoshikawa1, Kenichi Ogawa, Yoshihiro Toya, Seiji Akimoto , Fumio Matsuda, Hiroshi Shimizu
  Communications Biology 4, 343 (2021).

  • URL
• "Thioredoxin pathway in Anabaena sp. PCC 7120: case of the NADPH-thioredoxin reductase C"
  Frederic Deschoenmaeker, Shoko Mihara, Tatsuya Niwa, Hideki Taguchi, Ken-Ichi Wakabayashi, Masakazu Toyoshima, Hiroshi Shimizu, Toru Hisabori
  The Journal of Biochemistry mvab014 (2021).
• "Role of type I NADH dehydrogenase in Synechocystis sp. PCC 6803 under phycobilisome excited red light"
  Masakazu Toyoshima, Chiaki Yamamoto, Yoshifumi Ueno, Yoshihiro Toya, Seiji Akimoto, Hiroshi Shimizu
  Plant Science 304, 110798 (2021).

Review papers

• "バイオプロセス運転の最適化と自動化"
  清水 浩
  生物工学会誌 99, 538-542 (2021).
• "Recent advances in metabolic engineering-integration of in silico design and experimental analysis of metabolic pathways"
  Hiroshi Shimizu, Yoshihiro Toya
  Journal of Bioscience and Bioengineering 132, 5, 429-436 (2021).
• "フラックス解析のいろいろ"
  戸谷 吉博
  生物工学会誌 99, 1, 36 (2021).

Ph.D. theses

• "酵素反応測定と代謝フラックス解析に基づく代謝経路の律速反応の推定に関する研究"
  北村 さや香
  (2021).
• "In vitroモデル細胞を用いた代謝フラックス変化とがん細胞の増殖や生存との関係に関する研究"
  野口 真悟
  (2021).

Books

• "第Ⅳ部、3. 光合成のカギとなる段階を探せ"
  清水 浩, 豊島 正和
  光合成 (朝倉書店), 174-178 (2021).