Publication

2010

Original papers

• "Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress"
  Takaaki Horinouchi, Kuniyasu Tamaoka, Chikara Furusawa, Naoaki Ono, Shingo Suzuki, Takashi Hirasawa, Tetsuya Yomo, Hiroshi Shimizu
  BMC Genomics 11, 1, 579 (2010).
• "Genome-wide expression analysis of Saccharomyces pastorianus orthologous genes using oligonucleotide microarrays"
  Takaaki Horinouchi, Katsunori Yoshikawa, Risa Kawaide, Chikara Furusawa, Yoshihiro Nakao, Takashi Hirasawa, Hiroshi Shimizu
  Journal of Bioscience and Bioengineering 110, 5, 602-607 (2010).
• "13C-Metabolic flux analysis for batch culture of Escherichia coli and its pyk and pgi gene knockout mutants based on mass isotopomer distribution of intracellular metabolites"
  Yoshihiro Toya, Nobuyoshi Ishii, Kenji Nakahigashi, Takashi Hirasawa, Tomoyoshi Soga, Masaru Tomita, Kazuyuki Shimizu
  Biotechnology Progress 26, 4, 975-992 (2010).

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• "Requirement of de novo synthesis of the OdhI protein in penicillin-induced glutamate production by Corynebacterium glutamicum"
  Jongpill Kim, Hirohisa Fukuda, Takashi Hirasawa, Keisuke Nagahisa, Kazuo Nagai, Masaaki Wachi, Hiroshi Shimizu
  Applied Microbiology and Biotechnology 86, 3, 911-920 (2010).
• "Differential importance of trehalose accumulation in Saccharomyces cerevisiae in response to various environmental stresses"
  Siraje Arif Mahmud, Takashi Hirasawa, Hiroshi Shimizu
  Journal of Bioscience and Bioengineering 109, 3, 262-266 (2010).
• "Relationship between noise characteristics in protein expressions and regulatory structures of amino acid biosynthesis pathways"
  Tadashi Yamada, Jianhong Ou, Chikara Furusawa, Takashi Hirasawa, Tetsuya Yomo, Hiroshi Shimizu
  IET Systems Biology 4, 1, 82-89 (2010).

Review papers

• "Saccharomyces cerevisiae and DNA microarray analyses: what did we learn from it for a better understanding and exploitation of yeast biotechnology"
  Takashi Hirasawa, Chikara Furusawa, Hiroshi Shimizu
  Applied Microbiology and Biotechnology 87, 2, 391-400 (2010).
• "Development of a Prediction System for Metabolic Fluxes based on Genome Information"
  Yohei Shinfuku, Natee Sorpitiporn, Masahiro Sono, Takashi Hirasawa, Chikara Furusawa, Hiroshi Shimizu
  ソフトウエアバイオロジー 9, 18-21 (2010).

Ph.D. theses

• "A study of the effect of trehalose accumulation on environmental stresses in Saccharomyces cerevisiae"
  Siraje Arif Mahmud
  (2010).
• "Metabolic engineering approaches for glutamate production in Corynebacterium glutamicum"
  Jong Pill Kim
  (2010).