Publication

2009

Original papers

• "Investigating the effectiveness of DNA microarray analysis for identifying the genes involved in L-lactate production by Saccharomyces cerevisiae"
  Takashi Hirasawa, Aki Ookubo, Katsunori Yoshikawa, Keisuke Nagahisa, Chikara Furusawa, Hideki Sawai, Hiroshi Shimizu
  Applied Microbiology and Biotechnology 84, 6, 1149-1159 (2009).
• "Analysis of stochasticity in promoter activation by using a dual-fluorescence reporter system"
  Jianhong Ou, Chikara Furusawa, Tetsuya Yomo, Hiroshi Shimizu
  BioSystems 97, 3, 160-164 (2009).
• "Analysis of adaptation to high ethanol concentration in Saccharomyces cerevisiae using DNA Microarray"
  Thai Nho Dinh, Keisuke Nagahisa, Katsunori Yoshikawa, Takashi Hirasawa, Chikara Furusawa, Hiroshi Shimizu
  Bioprocess and Biosystems Engineering 32, 5, 681-688 (2009).
• "Systematic phenome analysis of Escherichia coli multiple‐knockout mutants reveals hidden reactions in central carbon metabolism"
  Kenji Nakahigashi,Yoshihiro Toya, Nobuyoshi Ishii, Tomoyoshi Soga, Miki Hasegawa, Hisami Watanabe, Yuki Takai, Masayuki Honma, Hirotada Mori, Masaru Tomita
  Molecular Systems Biology 5, 1, 306 (2009).
• "Development and experimental verification of a genome-scale metabolic model for Corynebacterium glutamicum"
  Yohei Shinfuku, Natee Sorpitiporn, Masahiro Sono, Chikara Furusawa, Takashi Hirasawa, Hiroshi Shimizu
  Microbial Cell Factories 8, 1, 43 (2009).
• "Proteomic analysis of responses to osmotic stress in laboratory and sake-brewing strains of Saccharomyces cerevisiae"
  Takashi Hirasawa, Kazuyuki Yamada, Keisuke Nagahisa, Thai Nho Dinh, Chikara Furusawa, Yoshio Katakura, Suteaki Shioya, Hiroshi Shimizu
  Process Biochemistry 44, 6, 647-653 (2009).
• "Analysis of metabolic network based on conservation of molecular structure"
  Tomoharu Hogiri, Chikara Furusawa, Yohei Shinfuku, Naoaki Ono, Hiroshi Shimizu
  BioSystems 95, 3, 175-178 (2009).
• "Comprehensive phenotypic analysis for identification of genes affecting growth under ethanol stress in Saccharomyces cerevisiae"
  Katsunori Yoshikawa, Tadamasa Tanaka, Chikara Furusawa, Keisuke Nagahisa, Takashi Hirasawa, Hiroshi Shimizu
  FEMS Yeast Research 9, 1, 32-44 (2009).
• "Effect of trehalose accumulation on response to saline stress in Saccharomyces cerevisiae"
  Siraje Arif Mahmud, Keisuke Nagahisa, Takashi Hirasawa, Katsunori Yoshikawa, Kengo Ashitani, Hiroshi Shimizu
  Yeast 26, 1, 17-30 (2009).
• "Model-based analysis of non-specific binding for　background correction of high-density oligonucleotide　microarrays"
  Chikara Furusawa, Naoaki Ono, Shingo Suzuki, Tomoharu Agata, Hiroshi Shimizu, Tetsuya Yomo
  Bioinfromatics 25, 1, 36-41 (2009).
• "Effect of odhA overexpression and odhA antisense RNA expression on Tween-40-triggered glutamate production by Corynebacterium glutamicum"
  Jongpill Kim, Takashi Hirasawa, Yoshiyasu Sato, Keisuke Nagahisa, Chikara Furusawa, Hiroshi Shimizu
  Applied Microbiology Biotechnology 81, 6, 1097-1106 (2009).

Review papers

• "乳酸生産能を付与した酵母の網羅的遺伝子発現情報に基づいた生産性向上のための育種"
  平沢 敬, 大久保 亜紀, 吉川 勝徳, 古澤 力, 清水 浩
  ソフトウエアバイオロジー 8, 54-61 (2009).

Ph.D. theses

• "細胞育種に向けた遺伝子発現と表現型の網羅的情報の解析"
  吉川 勝徳
  (2009).
• "Analysis of adaptation to high ethanol concentration in Saccharomyces cerevisiae"
  Thai Nho Dinh
  (2009).
• "Study of promoter activation via single cell analysis"
  Jianhong Ou
  (2009).