Publication

2008

Original papers

• "Genome-wide analysis of the effects of location and number of stress response elements on gene expression in Saccharomyces cerevisiae"
  Katsunori Yoshikawa, Chikara Furusawa, Takashi Hirasawa, Hiroshi Shimizu
  Journal of Bioscience and Bioengineering 106, 5, 507-510 (2008).
• "Characterization of new isolated Ralstonia eutropha strain A-04 and kinetic study of biodegradable copolyester poly(3-hydroxybutyrate-co-4-hydroxybutyrate) production"
  Suchada Chaprateep, Yoshio Katakura, Sirirat Visetkoop, Hiroshi Shimizu, Songsri Kulpreecha, Suteaki Shioya
  Journal of Industrial Microbiology and Biotechnology 35, 11, 1205-1215 (2008).
• "Improvement of L-lactate production by CYB2 gene disruption in a recombinant Saccharomyces cerevisiae strain under low pH condition"
  Aki Ookubo, Takashi Hirasawa, Katsunori Yoshikawa, Keisuke Nagahisa, Chikara Furusawa, Hiroshi Shimizu
  Bioscience, Biotechnology, and Biochemistry 72, 11, 3063-3066 (2008).
• "Distinct roles of two anaplerotic pathways in glutamate production induced by biotin limitation in Corynebacterium glutamicum"
  Hiroki Sato, Keita Orishimo, Tomkazu Shirai, Takashi Hirasawa, Keisuke Nagahisa, Hiroshi Shimizu, Masaaki Wachi
  Journal of Bioscience and Bioengineering 106, 1, 51-58 (2008).
• "Adaptation of Saccharomyces cerevisiae cells to high ethanol concentration and changes in fatty acid composition of membrane and cell size"
  Thai Nho Dinh, Keisuke Nagahisa, Takashi Hirasawa, Chikara Furusawa, Hiroshi Shimizu
  PloS One 3, 7, e2623 (2008).
• "An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays."
  Naoaki Ono, Shingo Suzuki, Chikara Furusawa, Tomoharu Agata, Akiko Kashiwagi, Hiroshi Shimizu, Tetsuya Yomo
  Bioinformatics 24, 10, 1278-1285 (2008).
• "Dynamic change in promoter activation during lysine biosynthesis in Escherichia coli cells."
  Jianhong Ou, Tadashi Yamada, Keisuke Nagahisa, Takashi Hirasawa, Chikara Furusawa, Tetsuya Yomo, Hiroshi Shimizu
  Molecular BioSystems 4, 2, 128-134 (2008).

Review papers

• "微生物代謝のシステムバイオロジー ―オミックス解析からシミュレーションへ―"
  戸谷吉博, 石井伸佳, 冨田勝
  バイオインダストリー 25, 44-51 (2008).
• "Beer Volatile Compounds and Their Application to Low-Malt Beer Fermentation"
  Michiko Kobayashi, Hiroshi Shimizu, Suteaki Shioya
  Journal of Bioscience and Bioengineering 106, 4, 317-323 (2008).
• "バイオ情報を基盤とする有用生物創製の時代を拓く代謝情報工学"
  清水 浩, 古澤 力, 平沢 敬
  バイオサイエンスとインダストリー 66, 8, 426-432 (2008).
• "ビール醸造におけるアルコール濃度と揮発性成分の同時制御法,"
  小林 倫子, 清水 浩, 塩谷 捨明
  ソフトウエアバイオロジー 7, 44-47 (2008).
• "ガスクロマトグラフ-質量分析計によるコリネ型細菌の精密な代謝フラックス解析と核磁気共鳴を用いた解析結果の検証"
  白井 智量, 松崎 匡浩, 葛本 雅宣, 永久 圭介, 古澤 力, 塩谷 捨明, 清水 浩
  生物工学会誌 86, 1, 14 (2008).

Ph.D. theses

• "代謝ネットワークに見られる遺伝子発現の環境応答と揺らぎの解析"
  山田 忠司
  (2008).

Books

• "メタボロミクスの先端技術と応用, 第14章メタボロームデータを用いた代謝フラックス解析 (シーエムシー出版)"
  清水 浩, 古澤 力, 白井 智量
  (2008).